Thermosetting supramolecular polymerization of compartmentalized DNA fibers with stereo sequence and length control
نویسندگان
چکیده
•Supramolecular polymers with blocks of different DNA sequences along their lengths•Unique thermosetting mechanism in which small pieces are fused end-to-end at 90°C•Fiber-fiber interactions controlled by the stereochemical sequence polymer•Protein-like folding DNA-polymer building critical to fiber morphology Supramolecular perform a range important functions nature—from cellular movement muscle contraction—enabled complex nanoscale structure. Realizing this complexity synthetic systems requires hierarchical self-assembly pathway. Branched assemble into supramolecular fibers unique, heat-driven, multistep process. By controlling process, smaller fragments can be “thermoset” together piece-by-piece fashion make segmented that display discrete lengths. Further control is afforded varying stereosequences polymers, resulting fiber-fiber interactions. Due water-based chemistry and biocompatibility, these may used softer, greener technologies require spatial organization components, such as biomaterials or energy-harvesting structures. nanostructures highly addressable compatible biological but often hundreds unique strands for assembly. On other hand, nature structures from identical compartmentalizing process: assembling molecules sub-components bringing across multiple length scales. Inspired we report conjugates through heat-driven form displaying axis polymerization. These one-dimensional retain compartmentalization programmed pre-assembled segments. Length over segments also achieved gel purification cylindrical micelles. Importantly, show hydrophobic core amplified distinctive morphological traits fibers. Molecular dynamics simulations model structure elucidate how manifests itself exciting examples nanomaterials built repetitive molecular units.1De Greef T.F. Smulders M.M. Wolffs M. Schenning A.P. Sijbesma R.P. Meijer E.W. polymerization.Chem. Rev. 2009; 109: 5687-5754Crossref PubMed Scopus (1735) Google Scholar, 2Sorrenti A. Leira-Iglesias J. Markvoort A.J. de T.F.A. Hermans T.M. Non-equilibrium Soc. 2017; 46: 5476-5490Crossref 3Aida T. Stupp S.I. Functional polymers.Science. 2012; 335: 813-817Crossref (2459) 4Gröschel A.H. Walther Löbling T.I. Schacher F.H. Schmalz H. Müller Guided co-assembly soft patchy nanoparticles.Nature. 2013; 503: 247-251Crossref (472) 5Zhuang Z. Jiang Lin Gao L. Yang C. Wang Cai Hierarchical nanowires synthesized stepwise polymerization.Angew. Chem. Int. Ed. Engl. 2016; 55: 12522-12527Crossref (51) 6Chin S.M. Synatschke C.V. Liu S. Nap R.J. Sather N.A. Q. Álvarez Edelbrock A.N. Fyrner Palmer L.C. et al.Covalent-supramolecular hybrid muscle-inspired anisotropic actuators.Nat. Commun. 2018; 9: 2395Crossref (75) 7Friedhoff P. Schneider Mandelkow E.M. E. Rapid assembly Alzheimer-like paired helical filaments microtubule-associated protein tau monitored fluorescence solution.Biochemistry. 1998; 37: 10223-10230Crossref (344) Scholar Their precise not only components’ chemical properties, hydrophobicity, stereochemistry, weight, polymerization mechanism, choreography between mechanistic control. Biology an astounding variety functional materials repeated use similar units translating information nano-, micro-, then macroscale.8Council N.R. Structures Guide New Materials Technology. National Academies Press, 1994Google 9Whitesides G.M. Grzybowski B. Self-assembly all scales.Science. 2002; 295: 2418-2421Crossref (5714) 10O'Leary L.E. Fallas J.A. Bakota E.L. Kang M.K. Hartgerink J.D. Multi-hierarchical collagen mimetic peptide triple helix nanofibre hydrogel.Nat. 2011; 3: 821-828Crossref (462) One way bridging size gap non-covalent interfacial forces blocks, seen membranes fibrils.11Leikin Rau D.C. Parsegian V.A. Temperature-favoured driven hydrophilic interactions.Nat. Struct. Biol. 1995; 2: 205-210Crossref (139) Scholar,12Wallace D. The role bonding fibril formation: quantitative model.Biopolymers. 1985; 24: 1705-1720Crossref (19) Control interfaces levels hierarchy Earlier work designing focused on formation uniform, stable product located thermodynamic minimum, recently there has been greater focus pathway complexity.1De Scholar,2Sorrenti Scholar,13Aliprandi Mauro De Cola Controlling imaging biomimetic self-assembly.Nat. 8: 10-15Crossref (338) 14Cui Chen Zhong Wooley K.L. Pochan D.J. Block copolymer via kinetic control.Science. 2007; 317: 647-650Crossref (882) 15Korevaar P.A. George S.J. Hilbers Pathway polymerization.Nature. 481: 492-496Crossref (605) 16Matern Dorca Y. Sánchez Fernández G. Revising under control.Angew. 2019; 58: 16730-16740Crossref (131) 17Petzetakis N. Dove O'Reilly R.K. Cylindrical micelles living crystallization-driven poly(lactide)-containing block copolymers.Chem. Sci. 955-960Crossref 18Hifsudheen Mishra Vedhanarayanan Praveen V.K. Ajayaghosh super-helix transition ?-systems: superseding chirality level.Angew. 56: 12634-12638Crossref (71) exploiting kinetics assembly, particular intermediates trapped guide desired pathway.19Gröschel Borisov O.V. Zhulina E.B. Precise multicompartment micelles.Nat. 710Crossref (432) 20Zhang Peng R. Xu F. Ke cholesterol-DNA nanorods.Bioconjug. 30: 1845-1849Crossref (14) 21Tantakitti Boekhoven X. Kazantsev R.V. Yu Li Zhuang Zandi Ortony J.H. Newcomb C.J. al.Energy landscapes systems.Nat. Mater. 15: 469-476Crossref (262) 22Chen Bae S.C. Granick Directed colloidal kagome lattice.Nature. 469: 381-384Crossref (947) For example, synthesis chemically defined kinetically trapping semi-crystalline micelles.23Gilroy J.B. Gädt Whittell G.R. Chabanne Mitchels J.M. Richardson R.M. Winnik M.A. Manners I. Monodisperse 2010; 566-570Crossref (452) 24Nazemi Boott C.E. Lunn Gwyther Hayward D.W. Comicelles aqueous media.J. Am. 138: 4484-4493Crossref 25Qiu Hudson Z.M. Micelle Multidimensional amphiphilic comicelles.Science. 2015; 347: 1329-1332Crossref (374) Furthermore, incorporate biomolecules peptides have synthesized.26Vyborna Vybornyi Rudnev A.V. Häner DNA-grafted polymers: ribbon formed pyrene-DNA chimeric oligomers.Angew. 54: 7934-7938Crossref (49) 27Engelen W. Wijnands S.P.W. Merkx Accelerating DNA-based computing polymer.J. 140: 9758-9767Crossref (38) 28Wijnands DNA-functionalized dynamic multicomponent assemblies emergent properties.Bioconjug. 1905-1914Crossref (25) 29Freeman Han Lewis Wester J.R. Stephanopoulos McClendon M.T. Lynsky Godbe Sangji al.Reversible superstructured networks.Science. 362: 808-813Crossref (156) responsive stimuli solution hold great promise advancement field realm.30Wijnands Engelen Lafleur R.P.M. activity recruitment polymer platform.Nat. 65Crossref (36) natural biopolymers polypeptides, sequence-defined emerged versatile components polymers.31Appukutti Serpell High definition polyphosphoesters: nucleic acids plastics.Polym. 2210-2226Crossref 32Cole J.P. Hanlon A.M. Rodriguez K.J. Berda Protein-like polymers.J. Polym. Part A: 191-206Crossref (57) 33Gody Maschmeyer Zetterlund P.B. Perrier one-pot sequence-controlled radical polymerization.Nat. 4: 2505Crossref (299) 34Lutz J.F. Ouchi D.R. Sawamoto Sequence-controlled 341: 1238149Crossref (780) 35Appukutti Jones Sequence isomerism uniform polyphosphoesters programmes folding.Chem. (Camb). 2020; 5307-5310Crossref A specific class amphiphiles, monomers appended short strand DNA.36Edwardson T.G. Carneiro K.M. Sleiman H.F. An efficient modular route DNA.Angew. 2014; 53: 4567-4571Crossref (99) amphiphiles undergo microphase separation completely composed one kind unit. combining language hybridization, predictably hierarchical, nanomaterials.37Chidchob Edwardson Synergy two languages nanostructures: cages.J. 4416-4425Crossref (69) Small differences result significant changes self-assembly, parameter seldom studied.34Lutz Scholar,36Edwardson Scholar,38Bousmail Chidchob Cyanine-mediated nanofiber growth dimensionality.J. 9518-9530Crossref (39) More rarely studied structural consequence sequence, potential influence self-assembly.39Golder M.R. Teichen P.E. Nguyen H.V. Milos Freedman S.A. Willard Johnson Stereochemical dictates unimolecular diblock assembly.J. 1596-1599Crossref (43) Chirality both parameters polymers; therefore, simultaneously essential program systems.40Garcia Iglesias Parisi Styan K.E. Waddington L.J. Deganutti Zorzi Grassi Melchionna Vargiu al.Chirality effects unraveled materials.Chem. 1862-1876Abstract Full Text PDF (100) Herein, present heat-activated simple group branched defined. mechanism—artificially micellar cation concentration—before hierarchically stably fusing them higher temperature ion concentration. Upon cooling, minimal exchange This allows robust compartments lengths, endowing specifically separate With same tunable sizes, simply Stable very low dispersity generated using electrophoretic separation. first time association finely tuned core. Using simulations, atomistic proposed helps illuminate microscopic interaction dictated sequence. Thermosetting technology—in high temperatures covalently crosslink chains solid resins—dates back beginning traditional industry.41Goodman S.H. Hanna Handbook Thermoset Plastics. William Andrew Publishing, 2014Google Instead cross-linking, demonstrated here ion-programmed, fusion: pre-formed Ion concentration introduces term “ion-programmed thermoset” modern propels controllably manufactured bC1212-DNAa was phosphoramidite-based solid-phase synthesis, affording monodisperse co-oligomer 19 nucleotides (DNAa) twelve bC12 (Figure 1A). oligo (phosphodiester); monomers—including those bC1212 block—are punctuated negative charges. characteristic confers noteworthy properties bC1212-DNAa: it soluble solutions, presence cations self-assembly. isomer C12 linear previously shown spherical micelles,36Edwardson when combined additional monomers.38Bousmail Block-copolymer theory predicts relative volume ratio determine morphology. However, prediction complicated charges within block.42Israelachvili Intermolecular Surface Forces.Third Edition. Academic 2011: 1-674Crossref Divalent observed dramatically affect bC1212-DNAa. At 1.25 mM Mg2+ spheres upon annealing (slow cooling 95°C; see experimental procedures), increased, gradual change (Figures 1B S1). 12.5 Mg2+, lengths 1 ?m were atomic force microscopy (AFM) air 1B, S2, S3), liquid 1C S4), transmission electron (TEM) 1D S5). dependent confirmed non-denaturing agarose electrophoresis S6 S7) light scattering (DLS) S8–S12), AFM Ca2+ S13). increase likely improves shielding micelle corona, its shrinkage hence decrease curvature. Ultimately, lead preference cylinders spheres.42Israelachvili Complexation addition EDTA resulted disassembly further followed reannealing brought about reassembly S14). Small-angle X-ray (SAXS) examine fine details concentrations. Mg2+—a long observed—we sharp peak q values indicating ordering crystallinity distance 3.27 nm 1E). could correspond spacing phosphodiester backbones ordered crystalline core.39Golder SAXS performed no peaks S15 S16). suggests transformation disordered globular sphere cylinder occurs increased facilitated part We 2A S17). slowly heated sequentially holding 10 min each 30°C, 50°C, 70°C, 90°C. Not up including 90°C, 90°C room temperature, elongated preserved S18). lower temperatures, mixtures intermediate present, converted longer polymers. dependence allowed possibility deliberately manipulating parameters. initial test subsequently increasing heating S19). Without heating, resultant much S20). Based observations, propose possible elongation First, gives preferred due inter-oligomer repulsion. Increasing decreases repulsion makes thermodynamically favorable. concentration, now heat overcome energy barrier transform fibers: potentially conformational rearrangement oligomer alkyl indicated SAXS.43Ryu Lee Transformation isotropic fluid nematic triggered nanocylinders.J. 2005; 127: 14170-14171Crossref As occurs, drives stability internal structure, hypothesized morphologies progressive fusion shorter raises interesting create regions compositions. would diffusion individual oligomers throughout slow. To investigate potential, fluorescently labeled bC1212-Cy3-DNAa bC1212-Cy5-DNAa 2B) separately 3.125 average 80 2C). solutions Cy3 Cy5 mixed other, mM, 30 polymerize 2C S21) DLS S22), confirming Forster resonance transfer (FRET) efficiency (E) separated (E = 0.04 ± 0.07) compared positive 0.71 0.09), themselves assembled place 2D S23–S26). Although low, non-zero FRET background 0.04) experiment degree mixing segments, occurring segment interfaces. total reflection (TIRF-M) Cy3/Cy5 clear 2F, S27, S28).44Gidi Bayram Ablenas Blum A.S. Cosa Efficient one-step PEG-Silane passivation glass surfaces single-molecule studies.ACS Appl. Interfaces. 10: 39505-39511Crossref (16) Our results suggest single slow monomer utility nanotechnology broad exciting.3Aida construction discrete, opens door design even function, spatially arranged enzyme cascades, multi-component nanowires, circuits computing, simple, monomers. demonstrate produce bC1212-DNAb, 19mer (as bC1212-DNAa), (see SI-II-a). Similar our fluorescent fibers, bC1212-DNAb polymerized 3A) temperature. hybridized (in situ mica) 11 gold nanoparticles decorated complementary DNAa, visualize Clearly distinguishable without attached 3B S29). Some DNAb suggesting some exchange; however, non-specific labeling controls S30 S31). method “tagging” aids visibility demonstrates organization. sizes changing pre-assemble 3C S32–S34). (?) analysis before after S35 S36). (LN) 23.3 (? 1.00) 41.9 1.34) after. supports statistical mode join stochastically. increases 6.25 3C). Despite dispersity, significance distribution still LN following 204 1.69) 382 1.82), respectively, (p < 0.001). Highly required manner. corona segmentation facilitate super-structured bundles, junctions, networks DNA-DNA truly assemblies, required. In systems, micelles, facilitating structures.23Gilroy Gäd
منابع مشابه
Compression, supramolecular organization and free radical polymerization of ethylene gas
At low pressure, ethylene gas consists of single translating and rotating molecules and behaves as an ideal gas. With decrease of free volume by compression, various rotating supramolecular particles are formed, which require less space for the movement: molecular pairs, bimolecules and oligomolecules. The appearance of a new kind of particles is manifested as a phase transition of the second o...
متن کاملSupramolecular copolymers with stimuli-responsive sequence control.
We report a novel responsive supramolecular copolymer able to change its monomer sequence as a result of molecular stimuli. Nucleic acids and RNAse are used as molecular inputs, controlling the clustering of specific monomers along the polymer backbone. This opens new ways towards the molecular control of synthetic supramolecular networks.
متن کاملSupramolecular polymerization.
ion of the proton from the amino group of the monomer (phenyl 4-(alkylamino)benzoate) by the base, the reactivity of the phenyl ester moiety is deactivated, which prevents monomers from reacting with each other. The anion produced by proton abstraction from the monomer will only react with initiator, leading to an activated monomer that possesses a more reactive phenyl ester moiety compared to ...
متن کاملOptical Characterization of Doped Thermoplastic and Thermosetting Polymer-Optical-Fibers
The emission properties of a graded-index thermoplastic polymer optical fiber and a step-index thermosetting one, both doped with rhodamine 6G, have been studied. The work includes a detailed analysis of the amplified spontaneous emission together with a study of the optical gains and losses of the fibers. The photostability of the emission of both types of fibers has also been investigated. Co...
متن کاملstudy of dna interaction with ethylenediaminetetraacetic acid and sesamol food additives
برهمکنش dnaتیموس گاوی طبیعی (ct-dna) با اتیلن دی آمین تترااستات (edta)در بافرtris-hcl با 8/7 ph ( دراین ph،edta به نمک دی سدیم تبدیل می شود) وسسامول در بافر tris-hcl با4/7 ph مورد بررسی قرار گرفته است. edta و سسامول استفاده فراوانی در تکنولوژی غذایی و صنعت شیمیایی دارند. مدل اتصال dna مربوط بهedta بوسیله اسپکتروفتومتری جذب، دورنگ نمایی حلقوی(cd)، ویسکومتری وژل الکتروفورز بررسی شده است. طیفuv ...
15 صفحه اولذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Chem
سال: 2021
ISSN: ['2451-9308', '2451-9294']
DOI: https://doi.org/10.1016/j.chempr.2021.05.022