Thermosetting supramolecular polymerization of compartmentalized DNA fibers with stereo sequence and length control

نویسندگان

چکیده

•Supramolecular polymers with blocks of different DNA sequences along their lengths•Unique thermosetting mechanism in which small pieces are fused end-to-end at 90°C•Fiber-fiber interactions controlled by the stereochemical sequence polymer•Protein-like folding DNA-polymer building critical to fiber morphology Supramolecular perform a range important functions nature—from cellular movement muscle contraction—enabled complex nanoscale structure. Realizing this complexity synthetic systems requires hierarchical self-assembly pathway. Branched assemble into supramolecular fibers unique, heat-driven, multistep process. By controlling process, smaller fragments can be “thermoset” together piece-by-piece fashion make segmented that display discrete lengths. Further control is afforded varying stereosequences polymers, resulting fiber-fiber interactions. Due water-based chemistry and biocompatibility, these may used softer, greener technologies require spatial organization components, such as biomaterials or energy-harvesting structures. nanostructures highly addressable compatible biological but often hundreds unique strands for assembly. On other hand, nature structures from identical compartmentalizing process: assembling molecules sub-components bringing across multiple length scales. Inspired we report conjugates through heat-driven form displaying axis polymerization. These one-dimensional retain compartmentalization programmed pre-assembled segments. Length over segments also achieved gel purification cylindrical micelles. Importantly, show hydrophobic core amplified distinctive morphological traits fibers. Molecular dynamics simulations model structure elucidate how manifests itself exciting examples nanomaterials built repetitive molecular units.1De Greef T.F. Smulders M.M. Wolffs M. Schenning A.P. Sijbesma R.P. 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William Andrew Publishing, 2014Google Instead cross-linking, demonstrated here ion-programmed, fusion: pre-formed Ion concentration introduces term “ion-programmed thermoset” modern propels controllably manufactured bC1212-DNAa was phosphoramidite-based solid-phase synthesis, affording monodisperse co-oligomer 19 nucleotides (DNAa) twelve bC12 (Figure 1A). oligo (phosphodiester); monomers—including those bC1212 block—are punctuated negative charges. characteristic confers noteworthy properties bC1212-DNAa: it soluble solutions, presence cations self-assembly. isomer C12 linear previously shown spherical micelles,36Edwardson when combined additional monomers.38Bousmail Block-copolymer theory predicts relative volume ratio determine morphology. However, prediction complicated charges within block.42Israelachvili Intermolecular Surface Forces.Third Edition. Academic 2011: 1-674Crossref Divalent observed dramatically affect bC1212-DNAa. At 1.25 mM Mg2+ spheres upon annealing (slow cooling 95°C; see experimental procedures), increased, gradual change (Figures 1B S1). 12.5 Mg2+, lengths 1 ?m were atomic force microscopy (AFM) air 1B, S2, S3), liquid 1C S4), transmission electron (TEM) 1D S5). dependent confirmed non-denaturing agarose electrophoresis S6 S7) light scattering (DLS) S8–S12), AFM Ca2+ S13). increase likely improves shielding micelle corona, its shrinkage hence decrease curvature. Ultimately, lead preference cylinders spheres.42Israelachvili Complexation addition EDTA resulted disassembly further followed reannealing brought about reassembly S14). Small-angle X-ray (SAXS) examine fine details concentrations. Mg2+—a long observed—we sharp peak q values indicating ordering crystallinity distance 3.27 nm 1E). could correspond spacing phosphodiester backbones ordered crystalline core.39Golder SAXS performed no peaks S15 S16). suggests transformation disordered globular sphere cylinder occurs increased facilitated part We 2A S17). slowly heated sequentially holding 10 min each 30°C, 50°C, 70°C, 90°C. Not up including 90°C, 90°C room temperature, elongated preserved S18). lower temperatures, mixtures intermediate present, converted longer polymers. dependence allowed possibility deliberately manipulating parameters. initial test subsequently increasing heating S19). Without heating, resultant much S20). Based observations, propose possible elongation First, gives preferred due inter-oligomer repulsion. Increasing decreases repulsion makes thermodynamically favorable. concentration, now heat overcome energy barrier transform fibers: potentially conformational rearrangement oligomer alkyl indicated SAXS.43Ryu Lee Transformation isotropic fluid nematic triggered nanocylinders.J. 2005; 127: 14170-14171Crossref As occurs, drives stability internal structure, hypothesized morphologies progressive fusion shorter raises interesting create regions compositions. would diffusion individual oligomers throughout slow. To investigate potential, fluorescently labeled bC1212-Cy3-DNAa bC1212-Cy5-DNAa 2B) separately 3.125 average 80 2C). solutions Cy3 Cy5 mixed other, mM, 30 polymerize 2C S21) DLS S22), confirming Forster resonance transfer (FRET) efficiency (E) separated (E = 0.04 ± 0.07) compared positive 0.71 0.09), themselves assembled place 2D S23–S26). Although low, non-zero FRET background 0.04) experiment degree mixing segments, occurring segment interfaces. total reflection (TIRF-M) Cy3/Cy5 clear 2F, S27, S28).44Gidi Bayram Ablenas Blum A.S. Cosa Efficient one-step PEG-Silane passivation glass surfaces single-molecule studies.ACS Appl. Interfaces. 10: 39505-39511Crossref (16) Our results suggest single slow monomer utility nanotechnology broad exciting.3Aida construction discrete, opens door design even function, spatially arranged enzyme cascades, multi-component nanowires, circuits computing, simple, monomers. demonstrate produce bC1212-DNAb, 19mer (as bC1212-DNAa), (see SI-II-a). Similar our fluorescent fibers, bC1212-DNAb polymerized 3A) temperature. hybridized (in situ mica) 11 gold nanoparticles decorated complementary DNAa, visualize Clearly distinguishable without attached 3B S29). Some DNAb suggesting some exchange; however, non-specific labeling controls S30 S31). method “tagging” aids visibility demonstrates organization. sizes changing pre-assemble 3C S32–S34). (?) analysis before after S35 S36). (LN) 23.3 (? 1.00) 41.9 1.34) after. supports statistical mode join stochastically. increases 6.25 3C). Despite dispersity, significance distribution still LN following 204 1.69) 382 1.82), respectively, (p < 0.001). Highly required manner. corona segmentation facilitate super-structured bundles, junctions, networks DNA-DNA truly assemblies, required. In systems, micelles, facilitating structures.23Gilroy Gäd

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ژورنال

عنوان ژورنال: Chem

سال: 2021

ISSN: ['2451-9308', '2451-9294']

DOI: https://doi.org/10.1016/j.chempr.2021.05.022